| 151 | Jidousha Bakuhatsu Jiken no Shinsou (Kouhen) (自動車爆発事件の真相filler | 05 jul 1999 | 4.6 |
| 152 | Nazo no Roujin Shissou Jiken filler | 12 jul 1999 | 4.2 |
| 153 | Sonoko no Abunai Natsumonogatari (Zenpen) (園子のアブない夏物語 | 19 jul 1999 | 4.4 |
| 154 | Sonoko no Abunai Natsumonogatari (Kouhen) (園子のアブない夏物語 | 26 jul 1999 | 4.6 |
| 155 | Suichuu no Kagi Misshitsu Jiken filler | 02 aug 1999 | 3.9 |
| 156 | Honchou no Keiji Koi Monogatari 2 (Zenpen) (本庁の刑事恋物語2 | 09 aug 1999 | 4.5 |
| 157 | Honchou no Keiji Koi Monogatari 2 (Kouhen) (本庁の刑事恋物語2 | 16 aug 1999 | 4.5 |
| 158 | Chinmoku no Kanjousen filler | 23 aug 1999 | 3.9 |
| 159 | Kaiki Gojuunotou Densetsu (Zenpen) (怪奇五重塔伝説filler | 06 sept 1999 | 4.2 |
| 160 | Kaiki Gojuunotou Densetsu (Kouhen) (怪奇五重塔伝説filler | 13 sept 1999 | 4.2 |
| 161 | Ryuusuitei ni Nagareru Satsui filler | 20 sept 1999 | 3.8 |
| 162 | Sora Tobu Misshitsu Kudou Shinichi Saisho no Jiken | 27 sept 1999 | 4.7 |
| 163 | Tsuki to Hoshi to Taiyou no Himitsu (Zenpen) (月と星と太陽の秘密 | 11 oct 1999 | 4.2 |
| 164 | Tsuki to Hoshi to Taiyou no Himitsu (Kouhen) (月と星と太陽の秘密 | 18 oct 1999 | 4.3 |
| 165 | Shounen Tanteidan Shoushitsu Jiken filler | 25 oct 1999 | 3.4 |
| 166 | Tottori Kumo Yashiki no Kai (Jiken-hen) (鳥取クモ屋敷の怪 | 01 nov 1999 | 4.3 |
| 167 | Tottori Kumo Yashiki no Kai (Giwaku-hen) (鳥取クモ屋敷の怪 | 08 nov 1999 | 4.4 |
| 168 | Tottori Kumo Yashiki no Kai (Kaiketsu-hen) (鳥取クモ屋敷の怪 | 15 nov 1999 | 4.4 |
| 169 | Venus' Kiss filler | 22 nov 1999 | 3.6 |
| 170 | Kurayami no Naka no Shikaku (Zenpen) (暗闇の中の死角 | 29 nov 1999 | 4.2 |
| 171 | Kurayami no Naka no Shikaku (Kouhen) (暗闇の中の死角 | 06 dec 1999 | 4.4 |
| 172 | Yomigaeru Shi no Dengon (Zenpen) (よみがえる死の伝言 | 13 dec 1999 | 4.4 |
| 173 | Yomigaeru Shi no Dengon (Kouhen) (よみがえる死の伝言 | 20 dec 1999 | 4.3 |
| 174 | 20-nenme no Satsui Symphony-gou Renzoku Satsujin Jiken | 03 jan 2000 | 4.7 |
| 175 | Yonkai Korosareta Otoko filler | 10 jan 2000 | 4.0 |
| 176 | Kuro no Soshiki to no Saikai (Haibara-hen) (黒の組織との再会 | 17 jan 2000 | 4.7 |
| 177 | Kuro no Soshiki to no Saikai (Conan-hen) (黒の組織との再会 | 24 jan 2000 | 4.8 |
| 178 | Kuro no Soshiki to no Saikai (Kaiketsu-hen) (黒の組織との再会 | 31 jan 2000 | 4.9 |
| 179 | Kissaten Truck Rannyuu Jiken filler | 07 feb 2000 | 3.8 |
| 180 | Akai Satsui no Nocturne (Zenpen) (赤い殺意の夜想曲filler | 14 feb 2000 | 4.1 |
| 181 | Akai Satsui no Nocturne (Kouhen) (赤い殺意の夜想曲filler | 21 feb 2000 | 4.0 |
| 182 | Daisousaku no 9-tsu no Door filler | 28 feb 2000 | 3.5 |
| 183 | Kiken na Recipe filler | 06 mar 2000 | 3.6 |
| 184 | Noroi no Kamen wa Tsumetaku Warau filler | 13 mar 2000 | 4.4 |
| 185 | Korosareta Meitantei (Zenpen) (殺された名探偵filler | 10 apr 2000 | 4.3 |
| 186 | Korosareta Meitantei (Kouhen) (殺された名探偵filler | 17 apr 2000 | 4.3 |
| 187 | Yami ni Hibiku Nazo no Juusei filler | 24 apr 2000 | 3.7 |
| 188 | Inochigake no Fukkatsu: Doukutsu no Tanteidan | 01 may 2000 | 4.4 |
| 189 | Inochigake no Fukkatsu: Fushoushita Meitantei | 08 may 2000 | 4.6 |
| 190 | Inochigake no Fukkatsu: Daisan no Sentaku | 15 may 2000 | 4.8 |
| 191 | Inochigake no Fukkatsu: Kokui no Kishi | 22 may 2000 | 4.7 |
| 192 | Inochigake no Fukkatsu: Kaette Kita Shinichi... | 29 may 2000 | 4.7 |
| 193 | Inochigake no Fukkatsu: Yakusoku no Basho | 05 jun 2000 | 4.7 |
| 194 | Imishin na Orgel (Zenpen) (意味深なオルゴール | 12 jun 2000 | 4.2 |
| 195 | Imishin na Orgel (Kouhen) (意味深なオルゴール | 19 jun 2000 | 4.2 |
| 196 | Mienai Kyouki Ran no Hatsu-suiri filler | 26 jun 2000 | 4.2 |
| 197 | Super Car no Wana (Zenpen) (スーパーカーの罠filler | 03 jul 2000 | 4.0 |
| 198 | Super Car no Wana (Kouhen) (スーパーカーの罠filler | 10 jul 2000 | 3.8 |
| 199 | Yougisha: Mouri Kogorou (Zenpen) (容疑者·毛利小五郎 | 17 jul 2000 | 4.4 |
| 200 | Yougisha: Mouri Kogorou (Kouhen) (容疑者·毛利小五郎 | 24 jul 2000 | 4.4 |
